Research Faculties / Visiting Scholars / Postdoctoral Research Associates / Assistants
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海耳倫 (Shura Hayryan) | |||||
| 博士後研究 (Postdoctoral Research Associate) | ||||||
| URL: http://www.sinica.edu.tw/~statphys/people/shura.html | ||||||
| E-Mail: shura@phys.sinica.edu.tw | ||||||
| Address: Institute of Physics, Academia Sinica, Nankang, Taipei 11529, Taiwan | ||||||
| FAX: +886-2-2782-2467 | ||||||
| Tel: (office) +886-2-27880058 ext. 6034 | ||||||
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Education: |
1996, Ph.D., Yerevan State University, Armenia | |||||
| 1976-1979, Post graduate student, Yerevan State University, Armenia | ||||||
| 1976, Graduated from Department of Physics, Yerevan State University, Armenia | ||||||
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Position Held: |
1998 - Date, Postdoc, Institute of Physics, Academia Sinica | |||||
| 1991-1998, Organizer and Head of the School of Informatics and Computer Education, Armenia | ||||||
| 1981-1991, Head of Lab. of Math. Modeling and Computations, Inst. of Microbiology of Acad. of Sciences of Armenia. | ||||||
| 1979-1981, Junior scientific researcher, Yerevan Physics Institute, Armenia. | ||||||
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Subjects of Research: |
Statistical Physics of Biological Macromolecules | |||||
| Mathematical Modeling and Molecular Simulations (Protein Folding) | ||||||
| Recent Publications: | ||||||
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A. Referred Journal Papers: |
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1. |
V. F. Morozov, Y. S. Mamasakhlisov, S. Hayryan, and C.-K. Hu, Microscopic Approach to the Helix-Coil Transition in DNA, Physica A 281, 51-59 (2000). PDF |
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2. |
S. Hayryan, S.-Y. Hu, R. J. Shang, and C.-K. Hu, Multicanonical Parallel Simulation of Proteins with Continuous Potentials, J. Comp. Chem. 22, 1-10 (2001). PDF |
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3. |
F. Eisenmenger, S.Hayryan, U. H. E. Hansmann, and C.-K. Hu, [SMMP] A Modern Package for Protein Simulations, Comp. Phys. Commu. 138, 192-212 (2001). PDF |
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4. |
S. Hayryan, E. Hayryan, and C.-K. Hu, Parallel Solution of Poisson-Boltzmann equation for Proteins, LNCS 2657, 54-62 (2003). PDF |
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5. |
S. Hayryan, C.-K. Hu, J. Skrivanek, E. Hayryan, and I. Pokorny, A New Analytical Method for Calculating the Solvent Accessible Surface Area of Macromolecules and its Gradients, J. Comp. Chem. 26, 334 (2005). PDF |
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| 6. | J. Busa, J. Dzurina, E. Hayryan, S. Hayryan, C.-K. Hu, J. Plavka, I. Pokorny, J. Skrivanek, and M.-C. Wu, ARVO: A Fortran package for computing solvent accessible surface area and volume of overlapping spheres via analytic equations. Comp. Phys. Comm. 165, 59 (2005). PDF | |||||
| 7. | V. F. Morozov, Y. S. Mamasakhlisov, A. V. Grigoryan, A. V. Badasyan, S. Hayryan, and C.-K. Hu, Helix-coil transition in closed circular DNA, Physica A 348, 327(2005). PDF | |||||
| 8. | M. Kouza, C.-F. Chang, S. Hayryan, T.-H. Yu, M. S. Li, T.-H. Huang, and C.-K. Hu, Folding of the Protein Domain hbSBD, Biophysical J. 89, 3353 (2005). PDF | |||||
| 9. | F. Eisenmenger, U. H. E. Hansmann, S. Hayryan, C.-K. Hu, An Enhanced Version of SMMP - Open-Source Software Package for Simulation of Proteins, Comp. Phys. Commun. 174, 422 (2006). PDF | |||||
| 10. | R. G. Ghulghazaryan, S. Hayryan, and C.-K. Hu, Efficient combination of Wang-Landau and transition matrix Monte Carlo methods for protein simulations, J. Comp. Chem. 28, 715 (2007). PDF | |||||
| 11. | Y Sh. Mamasakhlisov, S. Hayryan, and C.-K. Hu, Random Sequences with Power-law Correlations Exhibit Protein-like Behavior, J. Chem. Phys,126 145103 (2007). PDF | |||||
| 12. | Y. S. Mamasakhlisov, S. Hayryan, V. F. Morozov, and C.-K. Hu, RNA Folding in the Presence of Counterions, Phys. Rev. E 75, 061907 (2007). PDF | |||||
| 13. | J. Busa, S. Hayryan, C.-K. Hu, J. Skrivanek, and M.-C. Wu, Enveloping triangulation method for detecting internal cavities in proteins and algorithm for computing their surface areas and volumes, J. Comp. Chem. 30, 346-357 (2009). PDF | |||||
| 14. | J. Busa, S. Hayryan, C.-K. Hu, J. Skrivanek, and M.-C. Wu, CAVE: A Package for Detection and Quantitative Analysis of Internal Cavities in a System of Overlapping Balls: Application to Proteins, Comp. Phys. Comm, 181, 2116 (2010). PDF | |||||
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B. Conference Papers / Posters |
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| 1. | S. Hayryan, R. G. Ghulghazaryan, N. P. Ulrih, V. C. Serbec, and C.-K. Hu, From Computational Biophysics to Systems Biology, NIC Series Volume 36 (NIC, Julich, 2007) edited by U.H.E. Hansmann, J. Meinke, S. Mohanty and O. Zimmermann, pp. 141-143. PDF | |||||
| 2. | S. Hayryan, K. G. Sargsyan, and C.-K. Hu, Simulation of RNA Folding on the Simple Cubic Lattice, in the workshop "From Computational Biophysics to Systems Biology 2008", May 19-21, Jülich, Germany, 2008. (Conference paper, in CBSB08 conference proceeding, pp. 101-104 (2008). PDF | |||||
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